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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 101 | The Memories of First Love Case (Part 2) | May 18, 1998 | Canon |
| 102 | Historical Actor Murder Case (Part 1) | May 24, 1998 | Canon |
| 103 | Historical Actor Murder Case (Part 2) | Jun 1, 1998 | Canon |
| 104 | The Mysterious Robbers and Mansion Case (Part 1) | Jun 8, 1998 | Canon |
| 105 | The Mysterious Robbers and Mansion Case (Part 2) | Jun 15, 1998 | Canon |
| 106 | Scoop Picture Murder Case | Jun 22, 1998 | Filler |
| 107 | The Mysterious Mole Alien Case (Part 1) | Jun 29, 1998 | Filler |
| 108 | The Mysterious Mole Alien Case (Part 2) | Jul 6, 1998 | Filler |
| 109 | Detective Club Pursuit Case | Jul 13, 1998 | Filler |
| 110 | Cooking Classroom Murder Case (Part 1) | Jul 27, 1998 | Filler |
| 111 | Cooking Classroom Murder Case (Part 2) | Aug 3, 1998 | Filler |
| 112 | The Seven Mysteries of Teitan Elementary School Case | Aug 10, 1998 | Canon |
| 113 | The White Sandy Beach Murder Case | Aug 17, 1998 | Canon |
| 114 | Scuba Diving Murder Case (Part 1) | Aug 24, 1998 | Canon |
| 115 | Scuba Diving Murder Case (Part 2) | Aug 31, 1998 | Canon |
| 116 | The Mystery Writer Disappearance Case (Part 1) | Sep 7, 1998 | Canon |
| 117 | The Mystery Writer Disappearance Case (Part 2) | Sep 14, 1998 | Canon |
| 118 | The Naniwa Serial Murder Case | Sep 21, 1998 | Canon |
| 119 | Masked Yaiba Murder Case | Oct 12, 1998 | Filler |
| 120 | A Honey Cocktail Murder Case | Oct 19, 1998 | Filler |
| 121 | The Locked Bathroom Murder Case (Part 1) | Oct 26, 1998 | Canon |
| 122 | The Locked Bathroom Murder Case (Part 2) | Nov 2, 1998 | Canon |
| 123 | The Weather Girl Kidnapping Case | Nov 9, 1998 | Filler |
| 124 | A Mysterious Sniper Murder Case (Part 1) | Nov 16, 1998 | Filler |
| 125 | A Mysterious Sniper Murder Case (Part 2) | Nov 23, 1998 | Filler |
| 126 | The Traveling Drama Troupe Murder Case (Part 1) | Nov 30, 1998 | Filler |
| 127 | The Traveling Drama Troupe Murder Case (Part 2) | Dec 7, 1998 | Filler |
| 128 | The Black Organization: One Billion Yen Robbery Case | Dec 14, 1998 | Canon |
| 129 | The Girl from the Black Organization and the University Professor Murder Case | Jan 4, 1999 | Canon |
| 130 | The Indiscriminate Threatening Stadium Case (Part 1) | Jan 11, 1999 | Canon |
| 131 | The Indiscriminate Threatening Stadium Case (Part 2) | Jan 18, 1999 | Canon |
| 132 | Magic Lover's Murder Case (The Murder) | Jan 25, 1999 | Canon |
| 133 | Magic Lover's Murder Case (The Suspicion) | Feb 1, 1999 | Canon |
| 134 | Magic Lover's Murder Case (The Resolution) | Feb 8, 1999 | Canon |
| 135 | The Disappearing Weapon Case | Feb 15, 1999 | Filler |
| 136 | The Old Blue Castle Investigation Case (Part 1) | Feb 22, 1999 | Canon |
| 137 | The Old Blue Castle Investigation Case (Part 2) | Mar 1, 1999 | Canon |
| 138 | The Final Screening Murder Case (Part 1) | Mar 8, 1999 | Canon |
| 139 | The Final Screening Murder Case (Part 2) | Mar 15, 1999 | Canon |
| 140 | SOS! Message from Amy! | Apr 12, 1999 | Filler |
| 141 | The Night Before the Wedding Locked Room Case (Part 1) | Apr 19, 1999 | Canon |
| 142 | The Night Before the Wedding Locked Room Case (Part 2) | Apr 26, 1999 | Canon |
| 143 | The Suspicious Astronomical Observation | May 3, 1999 | Filler |
| 144 | The North Star No. 3 Express Leaving Ueno (Part 1) | May 10, 1999 | Canon |
| 145 | The North Star No. 3 Express Leaving Ueno (Part 2) | May 17, 1999 | Canon |
| 146 | Metropolitan Police Detective Love Story (Part 1) | May 24, 1999 | Canon |
| 147 | Metropolitan Police Detective Love Story (Part 2) | May 31, 1999 | Canon |
| 148 | The Sudden Street Car Stopping Case | Jun 7, 1999 | Filler |
| 149 | The Amusement Park Bungee Jumping Case | Jun 21, 1999 | Filler |
| 150 | The Truth of the Exploding Car Case (Part 1) | Jun 28, 1999 | Filler |
| 151 | The Truth of the Exploding Car Case (Part 2) | Jul 5, 1999 | Filler |
| 152 | The Mysterious Old Man Disappearance Case | Jul 12, 1999 | Filler |
| 153 | Sonoko's Dangerous Summer Story (Part 1) | Jul 19, 1999 | Canon |
| 154 | Sonoko's Dangerous Summer Story (Part 2) | Jul 26, 1999 | Canon |
| 155 | The Key in the Water Locked Room Case | Aug 2, 1999 | Filler |
| 156 | Metropolitan Police Detective Love Story 2 (Part 1) | Aug 9, 1999 | Canon |
| 157 | Metropolitan Police Detective Love Story 2 (Part 2) | Aug 16, 1999 | Canon |
| 158 | The Silent Ring Line | Aug 23, 1999 | Filler |
| 159 | Bizarre! The Legend of the Five Storied Pagoda (Part 1) | Sep 6, 1999 | Filler |
| 160 | Bizarre! The Legend of the Five Storied Pagoda (Part 2) | Sep 13, 1999 | Filler |
| 161 | The Murder Floating in Ryusuitei | Sep 20, 1999 | Filler |
| 162 | The Sealed Chamber in the Sky! Jimmy Kudo's First Case | Sep 27, 1999 | Canon |
| 163 | The Secret of the Moon, the Star, and the Sun (Part 1) | Oct 11, 1999 | Canon |
| 164 | The Secret of the Moon, the Star, and the Sun (Part 2) | Oct 18, 1999 | Canon |
| 165 | The Disappearing Junior Detective League Case | Oct 25, 1999 | Filler |
| 166 | Tottori Spider Mansion Demon (The Murder) | Nov 1, 1999 | Canon |
| 167 | Tottori Spider Mansion Demon (The Suspicion) | Nov 8, 1999 | Canon |
| 168 | Tottori Spider Mansion Demon (The Resolution) | Nov 15, 1999 | Canon |
| 169 | Venus' Kiss | Nov 22, 1999 | Filler |
| 170 | The Blind Spot in the Darkness (Part 1) | Nov 29, 1999 | Canon |
| 171 | The Blind Spot in the Darkness (Part 2) | Dec 6, 1999 | Canon |
| 172 | The Revival of the Dying Message (Part 1) | Dec 13, 1999 | Canon |
| 173 | The Revival of the Dying Message (Part 2) | Dec 20, 1999 | Canon |
| 174 | The 20 Year Old Murder Case: The Symphony Serial Murders | Jan 3, 2000 | Canon |
| 175 | The Man Who Was Killed Four Times | Jan 10, 2000 | Filler |
| 176 | Meeting with the Black Organization Again (Haibara Part) | Jan 17, 2000 | Canon |
| 177 | Meeting with the Black Organization Again (Conan Part) | Jan 24, 2000 | Canon |
| 178 | Meeting with the Black Organization Again (Resolution) | Jan 31, 2000 | Canon |
| 179 | The Coffee Shop Truck's Wild Entrance Case | Feb 7, 2000 | Filler |
| 180 | The Nocturne of Red Murderous Intent (Part 1) | Feb 14, 2000 | Filler |
| 181 | The Nocturne of Red Murderous Intent (Part 2) | Feb 21, 2000 | Filler |
| 182 | The Big Investigation of the Nine Doors | Feb 28, 2000 | Filler |
| 183 | A Dangerous Recipe | Mar 6, 2000 | Filler |
| 184 | A Cursed Mask Coldly Laughs | Mar 13, 2000 | Filler |
| 185 | The Murdered Famous Detective (Part 1) | Apr 10, 2000 | Filler |
| 186 | The Murdered Famous Detective (Part 2) | Apr 17, 2000 | Filler |
| 187 | The Mysterious Gun Rings in the Dark | Apr 24, 2000 | Filler |
| 188 | The Desperate Revival: The Cavern of the Detective Boys | May 1, 2000 | Canon |
| 189 | The Desperate Revival: The Wounded Great Detective | May 8, 2000 | Canon |
| 190 | The Desperate Revival: The Third Choice | May 15, 2000 | Canon |
| 191 | The Desperate Revival: The Black Knight | May 22, 2000 | Canon |
| 192 | The Desperate Revival: Shinichi's Return... | May 29, 2000 | Canon |
| 193 | The Desperate Revival: The Promised Place | Jun 5, 2000 | Canon |
| 194 | The Significant Music Box (Part 1) | Jun 12, 2000 | Canon |
| 195 | The Significant Music Box (Part 2) | Jun 19, 2000 | Canon |
| 196 | The Invisible Weapon, Ran's First Investigation | Jun 26, 2000 | Filler |
| 197 | The Super Car's Trap (Part 1) | Jul 3, 2000 | Filler |
| 198 | The Super Car's Trap (Part 2) | Jul 10, 2000 | Filler |
| 199 | Kogoro Mouri, Suspect (Part 1) | Jul 17, 2000 | Canon |
| 200 | Kogoro Mouri, Suspect (Part 2) | Jul 24, 2000 | Canon |