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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 301 | Parade of Malice and Saints (Part 1) | Nov 25, 2002 | Canon |
| 302 | Parade of Malice and Saints (Part 2) | Dec 2, 2002 | Canon |
| 303 | The Victim Who Came Back | Dec 9, 2002 | Filler |
| 304 | The Trembling Police Headquarters: 12 Million Hostages | Jan 6, 2003 | Canon |
| 305 | Unseen Suspect (Part 1) | Jan 13, 2003 | Canon |
| 306 | Unseen Suspect (Part 2) | Jan 20, 2003 | Canon |
| 307 | On the Trail of a Silent Witness (Part 1) | Jan 27, 2003 | Canon |
| 308 | On the Trail of a Silent Witness (Part 2) | Feb 3, 2003 | Canon |
| 309 | Contact with the Black Organization: Negotiation Chapter | Feb 10, 2003 | Canon |
| 310 | Contact with the Black Organization: Pursuit Chapter | Feb 17, 2003 | Canon |
| 311 | Contact with the Black Organization: Desperation Chapter | Feb 24, 2003 | Canon |
| 312 | Festival Dolls Dyed in the Setting Sun (Part 1) | Mar 3, 2003 | Canon |
| 313 | Festival Dolls Dyed in the Setting Sun (Part 2) | Mar 10, 2003 | Canon |
| 314 | Broken Fence of the Observatory | Mar 17, 2003 | Filler |
| 315 | Place Exposed to the Sun | Apr 14, 2003 | Filler |
| 316 | The Tarnished Masked Hero (Part 1) | Apr 21, 2003 | Canon |
| 317 | The Tarnished Masked Hero (Part 2) | Apr 28, 2003 | Canon |
| 318 | Cigar Case of Good Fortune (Part 1) | May 5, 2003 | Filler |
| 319 | Cigar Case of Good Fortune (Part 2) | May 12, 2003 | Filler |
| 320 | Ninja Art: The Art of Alibi Construction | May 19, 2003 | Filler |
| 321 | The Vanished Kidnapper's Getaway Car (Part 1) | May 26, 2003 | Filler |
| 322 | The Vanished Kidnapper's Getaway Car (Part 2) | Jun 2, 2003 | Filler |
| 323 | Heiji Hattori's Desperate Situation! (Part 1) | Jun 9, 2003 | Canon |
| 324 | Heiji Hattori's Desperate Situation! (Part 2) | Jun 16, 2003 | Canon |
| 325 | The Red Horse Among the Flames: The Incident | Jun 23, 2003 | Canon |
| 326 | The Red Horse Among the Flames: The Investigation | Jun 30, 2003 | Canon |
| 327 | The Red Horse Among the Flames: The Resolution | Jul 7, 2003 | Canon |
| 328 | Mystery of the Birthday Wine | Jul 14, 2003 | Filler |
| 329 | Friendship Can't Be Bought with Money (Part 1) | Jul 28, 2003 | Canon |
| 330 | Friendship Can't Be Bought with Money (Part 2) | Aug 4, 2003 | Canon |
| 331 | The Suspicious Spicy Curry (Part 1) | Aug 11, 2003 | Canon |
| 332 | The Suspicious Spicy Curry (Part 2) | Aug 18, 2003 | Canon |
| 333 | Alike Princesses (Part 1) | Aug 25, 2003 | Canon |
| 334 | Alike Princesses (Part 2) | Sep 1, 2003 | Canon |
| 335 | Secret of the Touto Film Making Centre (Part 1) | Sep 8, 2003 | Canon |
| 336 | Secret of the Touto Film Making Centre (Part 2) | Sep 15, 2003 | Canon |
| 337 | Hidden Facts of the Accidental Fall | Oct 13, 2003 | Filler |
| 338 | Four Porsches (Part 1) | Oct 20, 2003 | Canon |
| 339 | Four Porsches (Part 2) | Oct 27, 2003 | Canon |
| 340 | The Secret Hidden in the Bathroom (Part 1) | Nov 3, 2003 | Canon |
| 341 | The Secret Hidden in the Bathroom (Part 2) | Nov 10, 2003 | Canon |
| 342 | Bride of Huis Ten Bosch | Nov 17, 2003 | Filler |
| 343 | The Convenience Store Trap (Part 1) | Dec 1, 2003 | Canon |
| 344 | The Convenience Store Trap (Part 2) | Dec 8, 2003 | Canon |
| 345 | Head-to-Head Match With the Black Organization: A Dual Mystery on a Full Moon Night | Jan 5, 2004 | Canon |
| 346 | Find the Buttocks' Mark! (Part 1) | Jan 12, 2004 | Canon |
| 347 | Find the Buttocks' Mark! (Part 2) | Jan 19, 2004 | Canon |
| 348 | Love, a Ghost, and a World's Inheritance (Part 1) | Jan 26, 2004 | Filler |
| 349 | Love, a Ghost, and a World's Inheritance (Part 2) | Feb 2, 2004 | Filler |
| 350 | The Forgotten Cell Phone (Part 1) | Feb 9, 2004 | Canon |
| 351 | The Forgotten Cell Phone (Part 2) | Feb 16, 2004 | Canon |
| 352 | The Tragedy of The Fishing Tournament (Part 1) | Feb 23, 2004 | Filler |
| 353 | The Tragedy of The Fishing Tournament (Part 2) | Mar 1, 2004 | Filler |
| 354 | A Small Client (Part 1) | Mar 8, 2004 | Canon |
| 355 | A Small Client (Part 2) | Mar 15, 2004 | Canon |
| 356 | Kaitou Kid's Miraculous Midair Walk | Apr 12, 2004 | Canon |
| 357 | Sweetheart Is an Illusion of Spring | Apr 26, 2004 | Filler |
| 358 | Metropolitan Police Detective Love Story 5 (Part 1) | May 3, 2004 | Canon |
| 359 | Metropolitan Police Detective Love Story 5 (Part 2) | May 10, 2004 | Canon |
| 360 | A Mysterious Spring Beetle | May 17, 2004 | Filler |
| 361 | Teitan High School's Ghost Story (Part 1) | May 24, 2004 | Canon |
| 362 | Teitan High School's Ghost Story (Part 2) | May 31, 2004 | Canon |
| 363 | The City's Crows | Jun 7, 2004 | Filler |
| 364 | Synchronicity Case (Part 1) | Jun 14, 2004 | Filler |
| 365 | Synchronicity Case (Part 2) | Jun 21, 2004 | Filler |
| 366 | The Tragedy of the Pier in Plain Sight (Part 1) | Jul 5, 2004 | Canon |
| 367 | The Tragedy of the Pier in Plain Sight (Part 2) | Jul 12, 2004 | Canon |
| 368 | The Candy House the Witch Lives In | Jul 26, 2004 | Filler |
| 369 | Lucky Man's Suspense | Aug 2, 2004 | Filler |
| 370 | Running Away in a Game | Aug 9, 2004 | Filler |
| 371 | A Course Without Protest (Part 1) | Aug 23, 2004 | Canon |
| 372 | A Course Without Protest (Part 2) | Aug 30, 2004 | Canon |
| 373 | Poisonous Spider Trap | Sep 6, 2004 | Filler |
| 374 | A Code of Stars and Tobacco (Part 1) | Oct 18, 2004 | Canon |
| 375 | A Code of Stars and Tobacco (Part 2) | Oct 25, 2004 | Canon |
| 376 | Time Limit at 3 o'clock | Nov 1, 2004 | Filler |
| 377 | Momotaro Mystery Solving Tour (Part 1) | Nov 8, 2004 | Filler |
| 378 | Momotaro Mystery Solving Tour (Part 2) | Nov 15, 2004 | Filler |
| 379 | Case of the Long Sleeved Kimono at the Hidden Hot Spring on a Snowy Night (Part 1) | Nov 22, 2004 | Filler |
| 380 | Case of the Long Sleeved Kimono at the Hidden Hot Spring on a Snowy Night (Part 2) | Nov 29, 2004 | Filler |
| 381 | Whose Reasoning Show (Part 1) | Dec 6, 2004 | Canon |
| 382 | Whose Reasoning Show (Part 2) | Dec 13, 2004 | Canon |
| 383 | Miracle at Koshien Ball Park! The Defiants Face the Dark Demon | Dec 20, 2004 | Canon |
| 384 | The Target Is Kogoro Mori! | Jan 17, 2005 | Filler |
| 385 | Dissonance of the Stradivarius Violin (Overture) | Jan 24, 2005 | Canon |
| 386 | Dissonance of the Stradivarius Violin (Interlude) | Jan 31, 2005 | Canon |
| 387 | Dissonance of the Stradivarius Violin (Last Tune) | Feb 7, 2005 | Canon |
| 388 | Kogoro Gets Drunk in Satsuma (Part 1) | Feb 14, 2005 | Filler |
| 389 | Kogoro Gets Drunk in Satsuma (Part 2) | Feb 21, 2005 | Filler |
| 390 | Metropolitan Police Detective Love Story 6 (Part 1) | Feb 28, 2005 | Canon |
| 391 | Metropolitan Police Detective Love Story 6 (Part 2) | Mar 7, 2005 | Canon |
| 392 | The Mysterious Height Difference of 20cm | Mar 14, 2005 | Filler |
| 393 | A Kidnapping Case... So It Seems | Mar 21, 2005 | Filler |
| 394 | Big Adventure in the Eccentric Mansion: The Seal | Apr 18, 2005 | Canon |
| 395 | Big Adventure in the Eccentric Mansion: The Mechanism | Apr 25, 2005 | Canon |
| 396 | Big Adventure in the Eccentric Mansion: The Resolution | May 2, 2005 | Canon |
| 397 | Spicy, Bitter, Sweet Soup | May 9, 2005 | Filler |
| 398 | The Weird Family's Commission (Part 1) | May 16, 2005 | Canon |
| 399 | The Weird Family's Commission (Part 2) | May 23, 2005 | Canon |
| 400 | Ran's Suspicions | May 30, 2005 | Canon |