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| # | Title | Aired | Type |
|---|---|---|---|
| 501 | Clash of Red and Black (Suspicion) | Apr 14, 2008 | Canon |
| 502 | Clash of Red and Black (Innocence) | Apr 28, 2008 | Canon |
| 503 | Clash of Red and Black (Ready to Die) | May 12, 2008 | Canon |
| 504 | Clash of Red and Black (Killed in the Line of Duty) | May 19, 2008 | Canon |
| 505 | Lawyer Eri Kisaki's Testimony (Part 1) | Jun 16, 2008 | Canon |
| 506 | Lawyer Eri Kisaki's Testimony (Part 2) | Jun 23, 2008 | Canon |
| 507 | The Blind Spot in the Karaoke Box (Part 1) | Jun 30, 2008 | Canon |
| 508 | The Blind Spot in the Karaoke Box (Part 2) | Jul 7, 2008 | Canon |
| 509 | Red, White, Yellow, and the Detective Boys | Jul 14, 2008 | Canon |
| 510 | Conan vs. W Code Mystery | Jul 28, 2008 | Canon |
| 511 | Deduction Showdown! Shinichi vs. Subaru Okiya | Aug 4, 2008 | Canon |
| 512 | The Broken Horoscope | Aug 11, 2008 | Filler |
| 513 | Coffee Aroma with Murderous Intention (Part 1) | Sep 1, 2008 | Canon |
| 514 | Coffee Aroma with Murderous Intention (Part 2) | Sep 8, 2008 | Canon |
| 515 | Kaitou Kid's Teleportation Magic | Oct 20, 2008 | Canon |
| 516 | Fuurinkazan: The Mysterious Armoured Warrior | Nov 3, 2008 | Canon |
| 517 | Fuurinkazan: Shadow and Lightning's Conclusion | Nov 10, 2008 | Canon |
| 518 | Meiji Restoration Mystery Tour: Investigation Chapter | Dec 1, 2008 | Filler |
| 519 | Meiji Restoration Mystery Tour: Decipher Chapter | Dec 8, 2008 | Filler |
| 520 | Red Wine Indictment | Dec 15, 2008 | Filler |
| 521 | Murderer, Shinichi Kudo | Jan 19, 2009 | Canon |
| 522 | Shinichi's True Face and Ran's Tears | Jan 26, 2009 | Canon |
| 523 | What She Truly Wants to Ask | Feb 2, 2009 | Canon |
| 524 | The Blue Spark of Hate (Part 1) | Feb 9, 2009 | Canon |
| 525 | The Blue Spark of Hate (Part 2) | Feb 16, 2009 | Canon |
| 526 | A Present from the True Culprit | Feb 23, 2009 | Canon |
| 527 | The Malice Hidden Behind the Masque | Mar 2, 2009 | Filler |
| 528 | Might Over Mystery (Part 1) | Mar 9, 2009 | Canon |
| 529 | Might Over Mystery (Part 2) | Mar 16, 2009 | Canon |
| 530 | The Truth Behind the Urban Legend (Part 1) | Apr 18, 2009 | Canon |
| 531 | The Truth Behind the Urban Legend (Part 2) | Apr 25, 2009 | Canon |
| 532 | The Scar of First Love | May 2, 2009 | Canon |
| 533 | The Scar that Evokes the Past | May 9, 2009 | Canon |
| 534 | The New Scar and the Whistling Man | May 16, 2009 | Canon |
| 535 | An Old Scar and the Detective's Spirit | May 23, 2009 | Canon |
| 536 | The Secret of the Vanished Masterpiece | May 30, 2009 | Filler |
| 537 | Kaitou Kid vs the Strongest Safe (Part 1) | Jun 13, 2009 | Canon |
| 538 | Kaitou Kid vs the Strongest Safe (Part 2) | Jun 20, 2009 | Canon |
| 539 | A Fool's Inheritance | Jul 4, 2009 | Filler |
| 540 | The Day Kogoro Mouri Ceased Being a Detective (Part 1) | Jul 11, 2009 | Filler |
| 541 | The Day Kogoro Mouri Ceased Being a Detective (Part 2) | Jul 18, 2009 | Filler |
| 542 | The Disappearing Fish at Ikkaku Rock (Part 1) | Jul 25, 2009 | Canon |
| 543 | The Disappearing Fish at Ikkaku Rock (Part 2) | Aug 1, 2009 | Canon |
| 544 | The Hand That Plays in Dissonance | Aug 8, 2009 | Filler |
| 545 | The Witch Enshrouded by Fog (Part 1) | Sep 5, 2009 | Canon |
| 546 | The Witch Enshrouded by Fog (Part 2) | Sep 12, 2009 | Canon |
| 547 | Two Days with the Culprit (First Day) | Sep 19, 2009 | Filler |
| 548 | Two Days with the Culprit (Second Day) | Sep 26, 2009 | Filler |
| 549 | The Revolving Sushi Mystery (Part 1) | Oct 3, 2009 | Canon |
| 550 | The Revolving Sushi Mystery (Part 2) | Oct 10, 2009 | Canon |
| 551 | The Culprit is Genta's Dad (Part 1) | Oct 17, 2009 | Canon |
| 552 | The Culprit is Genta's Dad (Part 2) | Oct 24, 2009 | Canon |
| 553 | The Interrogation Room | Oct 31, 2009 | Filler |
| 554 | Stork Mystery Tour (Ran's Search Chapter) | Nov 7, 2009 | Canon |
| 555 | Stork Mystery Tour (Haruna's Pursuit Chapter) | Nov 14, 2009 | Canon |
| 556 | Intersection of Fear | Nov 21, 2009 | Filler |
| 557 | A Dangerous Party of Two | Nov 28, 2009 | Canon |
| 558 | The Mansion of Death and the Red Wall (Three Visits) | Dec 5, 2009 | Canon |
| 559 | The Mansion of Death and the Red Wall (Item in Hand) | Dec 12, 2009 | Canon |
| 560 | The Mansion of Death and the Red Wall (The Late Koumei) | Dec 19, 2009 | Canon |
| 561 | The Mansion of Death and the Red Wall (Empty Fort Strategy) | Dec 26, 2009 | Canon |
| 562 | Rainbow Colored Kidnapping | Jan 16, 2010 | Filler |
| 563 | Detective Boys vs. Burglar Gang (Turmoil) | Jan 23, 2010 | Canon |
| 564 | Detective Boys vs. Burglar Gang (Silence) | Jan 30, 2010 | Canon |
| 565 | The Eyewitness Who Did Not See | Feb 6, 2010 | Filler |
| 566 | The Partner is Santa-san | Feb 27, 2010 | Filler |
| 567 | Murderous Intent Raining On an Outdoor Spa | Mar 6, 2010 | Filler |
| 568 | Inspector Shiratori, Memories of the Cherry Blossom (Part 1) | Mar 13, 2010 | Canon |
| 569 | Inspector Shiratori, Memories of the Cherry Blossom (Part 2) | Mar 20, 2010 | Canon |
| 570 | The Crime with Zero Possibility to Be Proven | Mar 27, 2010 | Filler |
| 571 | Battle of the Haunted Warehouse's Treasure (Part 1) | May 1, 2010 | Canon |
| 572 | Battle of the Haunted Warehouse's Treasure (Part 2) | May 8, 2010 | Canon |
| 573 | The Whereabouts of the Embarrassing Charm (Part 1) | May 15, 2010 | Canon |
| 574 | The Whereabouts of the Embarrassing Charm (Part 2) | May 22, 2010 | Canon |
| 575 | The Alibi of the Black Dress (Part 1) | May 29, 2010 | Canon |
| 576 | The Alibi of the Black Dress (Part 2) | Jun 5, 2010 | Canon |
| 577 | The Truth Lit Up by the Fireflies | Jun 19, 2010 | Filler |
| 578 | The Crisis Beckoned by the Red Omen | Jun 26, 2010 | Canon |
| 579 | The Suggestion of Black Thirteen | Jul 3, 2010 | Canon |
| 580 | The Black Time Limit Drawing Near | Jul 10, 2010 | Canon |
| 581 | The Red Trembling Target | Jul 17, 2010 | Canon |
| 582 | The Night the Zombie Died | Jul 24, 2010 | Filler |
| 583 | Teacher Kobayashi's Love | Aug 14, 2010 | Canon |
| 584 | Inspector Shiratori's Broken Heart | Aug 21, 2010 | Canon |
| 585 | Timeless Sakura's Love | Aug 28, 2010 | Canon |
| 586 | The Kirin's Horn Vanished into Darkness | Sep 4, 2010 | Canon |
| 587 | Kid vs Four God's Detective Team | Sep 11, 2010 | Canon |
| 588 | The Trap of the Rooftop Farm | Sep 18, 2010 | Filler |
| 589 | The Worst Birthday (Part 1) | Sep 25, 2010 | Canon |
| 590 | The Worst Birthday (Part 2) | Oct 2, 2010 | Canon |
| 591 | The House with the Aquarium | Oct 16, 2010 | Filler |
| 592 | The Detective Memoir of Monkey and Rake (Part 1) | Oct 23, 2010 | Canon |
| 593 | The Detective Memoir of Monkey and Rake (Part 2) | Oct 30, 2010 | Canon |
| 594 | Hiroshima Miyajima Seven Wonders Tour (Part 1: Miyajima) | Nov 6, 2010 | Filler |
| 595 | Hiroshima Miyajima Seven Wonders Tour (Part 2: Hiroshima) | Nov 13, 2010 | Filler |
| 596 | The Alibi of the Fall | Nov 20, 2010 | Filler |
| 597 | The Scenario of the Steaming Locked Room (Part 1) | Nov 27, 2010 | Canon |
| 598 | The Scenario of the Steaming Locked Room (Part 2) | Dec 4, 2010 | Canon |
| 599 | A Friend of Justice | Dec 11, 2010 | Filler |
| 600 | The Dream the Kappa Saw (Part 1) | Dec 18, 2010 | Canon |